Recently I have been updating the statistic processing for association though diverse methods. Everything below is P < 0.005 (or 1 in 200 of happening at random).

From Ombre data

Bacteria	Rank	Shift
Bifidobacterium bifidum	species	Too High
Bifidobacterium subtile	species	Too High
Hungateiclostridiaceae	family	Too High
Liquorilactobacillus	genus	Too High
Liquorilactobacillus vini	species	Too High
Neisseriaceae	family	Too High
Peptoniphilus obesi	species	Too Low
Senegalimassilia	genus	Too High
unclassified Clostridiales	family	Too High

From Biomesight Data

One note, we do 4 different computations and in general they agree with each other (the Monte Carlo or Consensus Model). For Bifidobacterium species, that is not the case, some computations suggests too high and other computations suggests too low. Bifidobacterium with Autism have a variety of disagreements between studies. In this case, we know that the disagreement is due to the statistical method used.

As seen below, there is over prevalence (seen more often), but the values are smaller than the reference population.

Bacteria	Rank	Statistical Test	P Value	Shift
Bifidobacterium angulatum	species	Chi-2 prevalence	3.21E-12	Too High
Bifidobacterium angulatum	species	Mann_Whitney_Wilcoxon	0.000456655	Too Low
Bifidobacterium angulatum	species	Averages	0.000464826	Too Low

---

Bacteria	Rank	Shift
Absiella	genus	Too High
Acidaminococcus	genus	Too High
Actinomyces	genus	Too Low
Actinomycetaceae	family	Too Low
Actinomycetes	class	Too Low
Actinomycetota	phylum	Too Low
Agromyces	genus	Too High
Agromyces salentinus	species	Too High
Amoebophilaceae	family	Too High
Anaerotruncus	genus	Too High
Anaerotruncus colihominis	species	Too High
Anaerovibrio	genus	Too High
Anaerovibrio lipolyticus	species	Too High
Bacteroides	genus	Too High
Bacteroides cellulosilyticus	species	Too High
Bacteroides faecis	species	Too High
Bacteroides finegoldii	species	Too High
Bacteroides fragilis	species	Too Low
Bacteroides rodentium	species	Too High
Bacteroides stercorirosoris	species	Too High
Bacteroides thetaiotaomicron	species	Too High
Bacteroides uniformis	species	Too High
Bifidobacteriaceae	family	Too Low
Bifidobacteriales	order	Too Low
Bifidobacterium	genus	Too Low
Bifidobacterium adolescentis	species	Too Low
Bifidobacterium angulatum	species	Too High
Bifidobacterium angulatum	species	Too Low
Bifidobacterium bifidum	species	Too Low
Bifidobacterium catenulatum	species	Too High
Bifidobacterium catenulatum	species	Too Low
Bifidobacterium catenulatum PV20-2	strain	Too High
Bifidobacterium catenulatum PV20-2	strain	Too Low
Bifidobacterium catenulatum subsp. kashiwanohense	subspecies	Too High
Bifidobacterium catenulatum subsp. kashiwanohense	subspecies	Too Low
Bifidobacterium choerinum	species	Too Low
Bifidobacterium cuniculi	species	Too High
Bifidobacterium gallicum	species	Too High
Bifidobacterium gallicum	species	Too Low
Bifidobacterium indicum	species	Too High
Bifidobacterium indicum	species	Too Low
Bifidobacterium longum	species	Too Low
Bifidobacterium scardovii	species	Too High
Bifidobacterium subtile	species	Too Low
Burkholderia	genus	Too Low
Burkholderiales genera incertae sedis	no rank	Too Low
Caloramator fervidus	species	Too High
Caloramator indicus	species	Too High
Candidatus Amoebophilus	genus	Too High
Candidatus Amoebophilus asiaticus	species	Too High
Candidatus Blochmanniella	genus	Too High
Candidatus Blochmanniella camponoti	species	Too High
Clostridium	genus	Too High
Clostridium chartatabidum	species	Too High
Clostridium thermosuccinogenes	species	Too High
Collinsella aerofaciens	species	Too Low
Coriobacteriia	class	Too Low
Desulfotomaculaceae	family	Too High
Desulfovibrio	genus	Too High
Desulfuromonadaceae	family	Too Low
Desulfuromusa	genus	Too Low
Enterobacter	genus	Too Low
Enterobacter cloacae complex	species group	Too High
Enterobacter hormaechei	species	Too High
Enterobacterales	order	Too Low
Enterobacteriaceae	family	Too Low
Enterobacteriaceae incertae sedis	no rank	Too High
Erysipelothrix	genus	Too High
Escherichia	genus	Too Low
Escherichia coli	species	Too Low
Eukaryota	superkingdom	Too Low
Gammaproteobacteria	class	Too Low
Geopsychrobacteraceae	family	Too Low
Hathewaya	genus	Too High
Hathewaya histolytica	species	Too High
Hungateiclostridiaceae	family	Too High
Hungateiclostridium	genus	Too High
Hydrogenophilaceae	family	Too Low
Hydrogenophilales	order	Too Low
Hydrogenophilia	class	Too Low
Klebsiella oxytoca	species	Too High
Megamonas	genus	Too High
Megamonas	genus	Too Low
Megamonas funiformis	species	Too High
Megamonas funiformis	species	Too Low
Moorella group	norank	Too High
Oscillospira	genus	Too High
Parascardovia	genus	Too High
Parascardovia	genus	Too Low
Pedobacter	genus	Too High
Peptoniphilaceae	family	Too High
Peptoniphilus	genus	Too High
Phascolarctobacterium succinatutens	species	Too High
Phocaeicola	genus	Too High
Phocaeicola paurosaccharolyticus	species	Too High
Phocaeicola sartorii	species	Too High
Phocaeicola vulgatus	species	Too High
Porphyromonas	genus	Too High
Pseudoclostridium	genus	Too High
Rhodothermales	order	Too High
Rhodothermia	class	Too High
Rhodothermota	phylum	Too High
Sarcina	genus	Too Low
Sarcina maxima	species	Too Low
Segatella	genus	Too Low
Segatella albensis	species	Too Low
Segatella copri	species	Too Low
Segatella oulorum	species	Too High
Selenomonas	genus	Too High
Selenomonas infelix	species	Too High
Sphingobacteriaceae	family	Too High
Sphingobacteriales	order	Too High
Sphingobacteriia	class	Too High
Sphingobacterium bambusae	species	Too High
Streptococcus intermedius	species	Too High
Streptococcus mutans	species	Too High
Streptococcus thermophilus	species	Too Low
Thiomonas	genus	Too Low
Tissierellales	order	Too High
unclassified Bacteroidetes Order II.	order	Too High
Veillonella	genus	Too Low
Veillonella montpellierensis	species	Too Low

High Functioning Autism

We have smaller sample size, but do have some significant items

Ombre Data

Bacteria	Rank	Shift
Butyricimonas paravirosa	species	Too High
Hallella	genus	Too High
Hallella multisaccharivorax	species	Too High
Hoylesella oralis	species	Too High
Hoylesella timonensis	species	Too High
Leyella	genus	Too High
Leyella stercorea	species	Too High
Segatella baroniae	species	Too High
Segatella maculosa	species	Too High
Xylanibacter brevis	species	Too High

Biomesight Data

Bacteria	Rank	Shift
Bilophila wadsworthia	species	Too Low
Erysipelothrix	genus	Too Low
Erysipelothrix muris	species	Too Low
Holdemania	genus	Too Low

I will revisit as more data comes in.