Odds Ratio for Autism

This is just presenting the tables for Autism derived from the methodology described in this technical post: Odds Ratios and the Microbiome. There are only two symptoms with sufficent data to compute odds ratios. If you us Biomesight, make sure your samples have symptoms entered!

Here are some odds ratios using BiomeSight data. Odds Low means when the reading is below the Median and Odds High above the Median (of those with this symptom). We use the symptom median to get balanced (same approximate size) categories. Using an average results in poorer results.

Official Diagnosis: Autism

The key feature is too much bifidobacterium, to see things that may reduce is see Bifidobacterium Modifiers:  

Tax_Nametax_RankOdds LowOdds High
Bifidobacteriumgenus0.632.41
Actinomycetotaphylum0.642.29
Bifidobacteriaceaefamily0.652.24
Bifidobacterialesorder0.652.24
Bifidobacterium catenulatumspecies0.672.13
Actinomycetesclass0.671.97
Bacteroides rodentiumspecies1.860.68
Phocaeicola paurosaccharolyticusspecies1.830.68
Bifidobacterium gallicumspecies0.691.83
Phocaeicola sartoriispecies1.710.70
Bifidobacterium catenulatum PV20-2strain0.711.70
Phascolarctobacterium succinatutensspecies1.650.71
Clostridium thermosuccinogenesspecies1.590.67
Pseudoclostridiumgenus1.590.67
Bacteroides cellulosilyticusspecies1.590.71
Johnsonellagenus1.590.73
Sarcina maximaspecies0.751.59
Sarcinagenus0.751.59
Johnsonella ignavaspecies1.590.73
Bifidobacterium indicumspecies0.741.58
Veillonella montpellierensisspecies0.751.54
Acidaminococcusgenus1.540.69
Sphingobacteriaceaefamily1.520.74
Segatellagenus0.751.52
Hathewayagenus1.520.74
Phocaeicolagenus1.520.75
Hathewaya histolyticaspecies1.520.74
Anaerovibriogenus1.500.74
Rhodothermotaphylum1.500.71
Rhodothermalesorder1.500.71
Rhodothermiaclass1.500.71
Segatella coprispecies0.761.49
Actinomycetaceaefamily0.771.49
Porphyromonasgenus1.480.74
Enterobacteralesorder0.761.47
Natronincolagenus0.761.47
Sphingobacterium bambusaespecies1.470.75
Enterobacteriaceaefamily0.761.46
Escherichiagenus0.761.46
Bacteroides finegoldiispecies1.450.76
Anaerovibrio lipolyticusspecies1.450.76
Natronincola peptidivoransspecies0.771.45
Peptostreptococcaceaefamily0.771.44
Bifidobacterium choerinumspecies0.771.44
Parabacteroides goldsteiniispecies1.440.77
Acetobacteriumgenus1.430.77
Erysipelothrixgenus1.430.75
Collinsella aerofaciensspecies0.771.43
Bifidobacterium adolescentisspecies0.781.42
Phocaeicola massiliensisspecies1.420.73
Acetivibriogenus1.420.77
Streptococcus australisspecies0.791.41
Streptococcus parasanguinisspecies0.781.41
Candidatus Amoebophilusgenus1.410.76
Candidatus Amoebophilus asiaticusspecies1.410.76
Amoebophilaceaefamily1.410.76
Selenomonasgenus1.400.77
Desulfovibriogenus1.400.77
Caloramator fervidusspecies1.400.76
Anaerotruncusgenus1.390.78
Bacteroides faecisspecies1.380.78
Acetivibrio alkalicellulosispecies1.370.78
Selenomonas infelixspecies1.370.77
Clostridiumgenus1.370.79
Actinomycesgenus0.801.36
Bacteroides fragilisspecies0.791.36
Erysipelothrix murisspecies1.360.78
Alkalithermobacter thermoalcaliphilusspecies0.801.35
Anaerotruncus colihominisspecies1.350.79
Sphingobacterialesorder1.340.80
Sphingobacteriiaclass1.340.80
Caloramatorgenus1.330.80
Bifidobacterium longumspecies0.801.33
Caloramator mitchellensisspecies1.320.80
Peptococcusgenus1.320.79
Coprococcus eutactusspecies0.811.32
Rhodocyclalesorder0.821.32
Acidaminococcalesorder1.310.81
Acidaminococcaceaefamily1.310.81
Faecalibacterium prausnitziispecies1.300.81
Veillonellagenus0.821.30
Peptococcus nigerspecies1.290.80
Oscillospiragenus1.290.81
Streptococcusgenus0.821.29
Ruminococcus callidusspecies0.821.29
Blautiagenus1.290.82
Anaerostipesgenus1.290.81
Serratiagenus0.821.28
Streptococcaceaefamily0.821.28
delta/epsilon subdivisionsclade1.280.82
Phocaeicola vulgatusspecies1.280.82
Peptostreptococcaceae incertae sedisno rank0.821.28
Caldicellulosiruptoraceaefamily1.270.82
Caldicellulosiruptoralesorder1.270.82
Caldicellulosiruptorgenus1.270.82
Sedimentibacter hydroxybenzoicusspecies1.270.82
unclassified Bacteroidetes Order II.order1.270.79
Deltaproteobacteriaclass1.270.82
Coriobacteriiaclass0.831.27
Burkholderiaceaefamily0.861.27
Haemophilus parainfluenzaespecies0.831.27
Ectothiorhodospiraceaefamily1.260.81
Collinsellagenus0.831.26
Clostridiaceaefamily1.260.83
Streptococcus thermophilusspecies0.841.26
Phascolarctobacteriumgenus1.260.83
Shewanellaceaefamily1.260.79
Shewanellagenus1.260.79
Desulfovibrionalesorder1.260.82
Desulfovibrioniaclass1.260.82
Peptoniphilaceaefamily1.260.83
Yersiniaceaefamily0.841.26
Porphyromonas canisspecies1.260.77
Nostocaceaefamily1.260.82
Odoribactergenus1.250.82
Carnobacteriaceaefamily0.861.25
Tissierellalesorder1.250.83
Nitrosomonadalesorder0.881.25
Pasteurellalesorder0.841.24
Pasteurellaceaefamily0.841.24
Serratia entomophilaspecies0.841.24
Parabacteroides merdaespecies1.240.84
Desulfovibrionaceaefamily1.240.84
Rhodothermaceaefamily1.240.83
Thermoanaerobacterales Family III. Incertae Sedisfamily1.230.82
Bacteroides graminisolvensspecies0.861.23
Sporomusaceaefamily1.230.81
Bacteroides stercorirosorisspecies1.230.84
Parabacteroides johnsoniispecies1.230.82
Bacteroides thetaiotaomicronspecies1.230.84
Haemophilusgenus0.851.23
Alphaproteobacteriaclass1.230.84
Hydrocarboniphaga daqingensisspecies1.230.81
Pectinatus cerevisiiphilusspecies0.851.23
Bacteroidesgenus1.220.85
Eubacteriaceaefamily1.220.84
Lactobacillusgenus0.851.22
Paraprevotella claraspecies1.220.82
Olivibactergenus1.220.85
Doreagenus1.220.85
Peptoniphilusgenus1.220.84
Peptoniphilus methioninivoraxspecies1.220.85
Pseudomonadotaphylum0.851.22
Lachnospiraceaefamily1.220.85
Butyrivibriogenus1.210.82
Blautia coccoidesspecies1.210.85
Butyrivibrio proteoclasticusspecies1.210.82
Oscillospira guilliermondiispecies1.210.85
Rhodothermusgenus1.210.84
Bacteroides uniformisspecies1.210.85
Rhodothermus clarusspecies1.210.84
Hyphomicrobialesorder1.210.74
Pectinatusgenus0.861.21
Pedobactergenus1.200.85
Ruminiclostridium cellobioparumspecies1.200.85
Ruminiclostridium cellobioparum subsp. termitidissubspecies1.200.85

Autism: High Functioning

There is stark contrast with the above, bifidobacterium is not seen in the top ones!

Tax_Nametax_RankOdds LowOdds High
Desulfovibrionalesorder0.6773952.024324
Desulfovibrioniaclass0.6773952.024324
Desulfovibrionaceaefamily0.6785472.013471
Doreagenus1.8146510.677811
Bilophilagenus0.7088431.779777
Anaerotruncus colihominisspecies0.7024711.734749
Deltaproteobacteriaclass0.721871.689058
Phocaeicolagenus1.6692740.70199
delta/epsilon subdivisionsclade0.7259861.665663
Sphingobacteriumgenus0.7280261.654401
Sphingobacteriaceaefamily0.728721.650617
Anaerotruncusgenus0.746421.618626
Odoribactergenus0.7292661.590437
Anaerofilumgenus0.7541471.527128
Holdemaniagenus0.7457451.517317
Bacteroides thetaiotaomicronspecies0.7497161.50114
Sphingobacterium shayensespecies0.7633191.494186
Porphyromonadaceaefamily0.7704771.46075
Parabacteroidesgenus0.7717141.456064
Tannerellaceaefamily0.7717141.456064
PVC groupclade0.7616491.455481
Verrucomicrobiotaphylum0.7627161.451602
Odoribacteraceaefamily0.7628441.451138
Bacillales incertae sedisno rank1.4474340.753405
Lachnospiraceaefamily1.4471850.753477
Chromatialesorder0.7952581.44706
Parabacteroides merdaespecies1.4460310.764263
Rhodothermiaclass1.4403930.744067
Rhodothermotaphylum1.4403930.744067
Rhodothermalesorder1.4403930.744067
Flavobacteriiaclass0.7875831.440238
Flavobacterialesorder0.7875831.440238
Flavobacteriaceaefamily0.7875831.440238
Sphingobacteriiaclass0.7784141.43145
Sphingobacterialesorder0.7784141.43145
Thiotrichaceaefamily1.4149580.737403
Blautia obeumspecies1.4008710.767464
Caloramator fervidusspecies0.7887211.400038
Parabacteroides distasonisspecies0.7895461.393203
Eubacteriumgenus0.780041.39273
Burkholderiaceaefamily0.7942551.379749
Bacteroides stercorisspecies1.3765470.775412
Lactobacillalesorder1.374810.775997
Peptococcusgenus1.3729160.776637
Bacilliclass1.3686230.778099
Paraprevotellagenus1.3566180.747396
Tindallia magadiensisspecies0.7919611.356281
Tissierelliaclass1.3512940.784153
Anaerostipesgenus1.3496080.784169
Hathewaya histolyticaspecies0.8043591.346859
Hathewayagenus0.8049851.345006
Bacillalesorder1.3447750.786496
Peptococcus nigerspecies1.3438120.786845
Phocaeicola paurosaccharolyticusspecies1.3426960.796668
Blautia coccoidesspecies1.340180.788169
Coprococcusgenus1.3247350.793933
Anaerovibriogenus0.8183231.308705
Pseudomonadotaphylum0.8206381.3011

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