Bacteria to Hand-Pick for Autism with Biomesight samples

Some recent work has identified bacteria that are associated with Autism. For a summary of method, see this post. The following are the list of bacteria seen with Biomesight samples that are annotated with Autism. There are not sufficient samples yet for specific autism characteristics – so please check your uploaded samples and update the symptoms.

Note the list is specific and cannot be applied to other microbiome reports. There is a separate post for Ombre/Thryve samples.

These are bacteria that you want to reduce (with one caveat — the suggestions algorithm requires the percentile to be 50%ile or more). How to hand pick them? See below the list.

Note: you may only have a few of these. They are shown in the same sequence as seen on Microbiome Tree. The LAST item is what was found to be statistically significant.

  1. Nevskiales Sinobacteraceae Hydrocarboniphaga
  2. Gammaproteobacteria Enterobacterales Yersiniaceae
  3. Enterobacterales Yersiniaceae Serratia
  4. Yersiniaceae Serratia Serratia entomophila
  5. Enterobacterales Enterobacteriaceae Lelliottia
  6. Enterobacteriaceae Lelliottia Lelliottia amnigena
  7. Enterobacterales Enterobacteriaceae Enterobacter
  8. Enterobacteriaceae Enterobacter Enterobacter cloacae complex
  9. Enterobacter Enterobacter cloacae complex Enterobacter hormaechei
  10. Enterobacterales Enterobacteriaceae Escherichia
  11. Enterobacteriaceae Escherichia Escherichia albertii
  12. Enterobacteriaceae Escherichia Escherichia coli
  13. Rhodocyclales Zoogloeaceae Azoarcus
  14. Thiobacillaceae Thiobacillus Thiobacillus thiophilus
  15. Betaproteobacteria Burkholderiales Burkholderiaceae
  16. Burkholderiales Burkholderiaceae Limnobacter
  17. Burkholderiaceae Limnobacter Limnobacter litoralis
  18. Burkholderiales Genera incertae sedis Thiomonas Thiomonas thermosulfata
  19. Betaproteobacteria Burkholderiales Oxalobacteraceae
  20. Bacteroidia Bacteroidales Prevotellaceae
  21. Bacteroidales Prevotellaceae Prevotella
  22. Prevotellaceae Prevotella Prevotella copri
  23. Prevotellaceae Prevotella Prevotella paludivivens
  24. Prevotellaceae Prevotella Prevotella corporis
  25. Prevotellaceae Prevotella Prevotella oulorum
  26. Prevotellaceae Prevotella Prevotella veroralis
  27. Bacteroidaceae Bacteroides Bacteroides denticanum
  28. Bacteroidaceae Bacteroides Bacteroides gallinarum
  29. Bacteroidaceae Bacteroides Bacteroides caccae
  30. Bacteroidaceae Bacteroides Bacteroides graminisolvens
  31. Bacteroidaceae Bacteroides Bacteroides fragilis
  32. Peptostreptococcaceae Peptostreptococcaceae incertae sedis [Clostridium] paradoxum
  33. Eubacteriales Clostridiaceae Sarcina
  34. Clostridiaceae Sarcina Sarcina maxima
  35. Clostridiaceae Clostridium Clostridium cellulovorans
  36. Clostridiaceae Clostridium Clostridium frigoris
  37. Clostridiaceae Clostridium Clostridium chartatabidum
  38. Clostridiaceae Clostridium Clostridium nitrophenolicum
  39. Terrabacteria group Firmicutes Negativicutes
  40. Acidaminococcaceae Acidaminococcus Acidaminococcus fermentans
  41. Firmicutes Negativicutes Veillonellales
  42. Negativicutes Veillonellales Veillonellaceae
  43. Veillonellales Veillonellaceae Veillonella
  44. Veillonellaceae Veillonella Veillonella criceti
  45. Veillonellaceae Veillonella Veillonella dispar
  46. Veillonellales Veillonellaceae Megasphaera
  47. Veillonellaceae Megasphaera Megasphaera hominis
  48. Veillonellales Veillonellaceae Negativicoccus
  49. Veillonellaceae Negativicoccus Negativicoccus succinicivorans
  50. Selenomonadaceae Megamonas Megamonas funiformis
  51. Selenomonadales Selenomonadaceae Pectinatus
  52. Selenomonadaceae Pectinatus Pectinatus cerevisiiphilus
  53. Bacillales Planococcaceae Viridibacillus
  54. Bacilli Bacillales Sporolactobacillaceae
  55. Bacillales Sporolactobacillaceae Sporolactobacillus
  56. Sporolactobacillaceae Sporolactobacillus Sporolactobacillus putidus
  57. Staphylococcaceae Staphylococcus Staphylococcus pseudolugdunensis
  58. Bacillales Staphylococcaceae Salinicoccus
  59. Streptococcaceae Streptococcus Streptococcus thermophilus
  60. Streptococcaceae Streptococcus Streptococcus mutans
  61. Streptococcaceae Streptococcus Streptococcus vestibularis
  62. Cyanobacteria/Melainabacteria group Cyanobacteria Oscillatoriophycideae
  63. Cyanobacteria Oscillatoriophycideae Chroococcales
  64. Bifidobacteriaceae Bifidobacterium Bifidobacterium scardovii
  65. Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis
  66. Bifidobacteriaceae Bifidobacterium Bifidobacterium angulatum
  67. Bifidobacteriaceae Bifidobacterium Bifidobacterium breve
  68. Bifidobacteriaceae Bifidobacterium Bifidobacterium catenulatum
  69. Bifidobacterium Bifidobacterium catenulatum Bifidobacterium catenulatum subsp. kashiwanohense
  70. Bifidobacterium catenulatum Bifidobacterium catenulatum subsp. kashiwanohense Bifidobacterium kashiwanohense PV20-2
  71. Bifidobacteriaceae Bifidobacterium Bifidobacterium cuniculi
  72. Bifidobacteriaceae Bifidobacterium Bifidobacterium indicum
  73. Bifidobacteriaceae Bifidobacterium Bifidobacterium longum
  74. Bifidobacteriaceae Bifidobacterium Bifidobacterium thermacidophilum
  75. Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudocatenulatum
  76. Bifidobacteriaceae Bifidobacterium Bifidobacterium choerinum
  77. Bifidobacteriaceae Bifidobacterium Bifidobacterium gallicum
  78. Bifidobacteriales Bifidobacteriaceae Parascardovia
  79. Corynebacteriaceae Corynebacterium Corynebacterium durum

To make a selection, just check the appropriate checkboxes.

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